Publikationen

2022

Amélie Luise Godeau, Marco Leoni, Jordi Comelles, Tristan Guyomar, Michele Lieb, Hélène Delanoë-Ayari, Albrecht Ott, Sebastien Harlepp, Pierre Sens, Daniel Riveline

3D single cell migration driven by temporal correlation between oscillating force dipoles
eLife, 11 (2022) e71032

2021

M. Schenkelberger, C. Trapp, T. Mai, V. Giri, M. Mohammadi-Kambs, A. Ott

Ultrahigh molecular recognition specificity of competing DNA oligonucleotide strands in thermal equilibrium: a cooperative transition to order
New Journal of Physics 23, 043044 (2021) 1-22.

N. Khangholi †, M. Finkler †, R. Seemann, A. Ott, J.-B. Fleury

Photoactivation of Cell-Free expressed Archaerhodopsin-3 in a Model Cell Membrane
Int. J. Mol. Sci. 22, 11981 (2021) 1-8.
† geteilte Erstautorenschaft

D. A. D. Flormann, C. Anton, M. O. Pohland, Y. Bautz, K. Kaub, E. Terriac, T. E. Schäffer, J. Rheinlaender, A. Janshoff, A. Ott, F. Lautenschlaeger

Oscillatory microrheology, creep compliance and stress relaxation of biological cells reveal strong correlations as probed by atomic force microscopy
Frontiers in Physics-Biophysics 9, 711860 (2021) 1-12.

M. Finkler, S. Ravanbodshirazi, F. Grimm, P. Hartz, A. Ott.  

Full incorporation of the noncanonical amino acid hydroxylysine as a surrogate for lysine in green fluorescent protein.
Bioorg. Med. Chem. 41, 116207 (2021) 1–6. 

E. G. Worst †, M. Finkler †, M. Schenkelberger, Ö. Kurt, V. Helms, V. Noireaux, A. Ott.  

A Methylation-Directed, Synthetic Pap Switch Based on Self-Complementary Regulatory DNA Reconstituted in an All E. coli Cell-Free Expression System.
ACS Synth. Biol. 10 (2021) 2725–2739.
† Geteilte Erstautorenschaft

2020

M. Finkler, Ö. Kurt, F. Grimm, P. Hartz, A. Ott

A bead-based method for the removal of the amino acid lysine from cell-free transcription-translation systems. 
Journal of Biotechnology 324S, 100024 (2020) 1-6.

2019

M. Finkler, A. Ott

Bead-based assay for spatiotemporal gene expression control in cell-free transcription–translation systems BioTechniques
BioTechniques 66(1) (2019) 29

M. Mohammadi-Kambs, A. Ott

DNA oligomer binding in competition exhibits cooperativity
New J. Physics 483 (2019) 113027
 

2018

E. Wollrab, A. Ott

A Urey-Miller broth mirrors the mass density distribution of all Beilstein indexed organic molecules
New J. Phys. 20 (2018) 105003

P.-H. Wu, D. R. B. Aroush, A. Asnacios, W.-C. Chen, M. E. Dokukin, B. L. Doss, P. Durand-Smet, A. Ekpenyong, J. Guck, N. V. Guz, P. A. Janmey, J. S. H. Lee, N. M. Moore, A. Ott, Y.-C. Poh, R. Ros, M. Sander, I. Sokolov, J. R. Staunton, N. Wang, G. Whyte, D. Wirtz

A comparison of methods to assess cell mechanical properties
Nature Methods 15 (2018) 491
 

2017

M. Sander, H. Dobicki, A. Ott

Large Amplitude Oscillatory Shear Rheology of Living Fibroblasts: Path-Dependent Steady States
Biophysical Journal 113 (7) (2017) 1561-1573

M. Schenkelberger, S. Shanak, M. Finkler, E. G. Worst, V. Noireaux, V. Helms and A. Ott

Expression regulation by a methyl-CpG binding domain in an E. coli based, cell-free TX-TL system
Phys. Biol. 14 (2) (2017) 1478-3975

M. Mohammadi-Kambs, K. Hölz, M. M. Somoza and A. Ott

Hamming Distance as a Concept in DNA Molecular Recognition
ACS Omega 2 (4) (2017) 1302-1308
 

2016

S. Scherer, E. Wollrab, L. Codutti, T. Carlomagno, SG. da Costa, A. Volkmer, A. Bronja, OJ. Schmitz and A. Ott

Chemical Analysis of a "Miller-Type" Complex Prebiotic Broth
Part 2: Gas, Oil, Water and the Oil/Water-Interface.
Orig. Life Evol. Biosph. 46 (2-3) (2016) 149-69

E.G. Worst, P. Zimmer, E. Wollrab, K. Kruse and A. Ott

Unbounded growth patterns of reproducing, competing polymers - similarities to biological evolution
New Journal of Physics 18 (2016) 1003003

M.R.Shaebani, A. Pasula, A. Ott and L. Santen

Tracking of plus-ends reveals microtubule functional diversity in different cell types
Scientific Reports 6 (2016) 30285

H. Bokkasam and A. Ott

Information Limited Oligonucleotide Amplification Assay for Affinity-Based, Parallel Detection Studies
PloS ONE Vol. 11(3) (2016) e0151072

E.G. Worst, M.P. Exner, A. De Simone, M. Schenkelberger, V. Noireaux, N. Budisa and A. Ott

Residue-specific incorporation of noncanonical amino acids into model proteins using an Escherichia coli cell-free transcription-translation system
J. Vis. Exp. 114 (2016) 54273
 

2010-2015

E. G. Worst, M. P. Exner, A. De Simone,  M. Schenkelberger, V. Noireaux, N. Budisa and A. Ott

Cell-free expression with the toxic aminoacid canavanine
Bioorganic & Medicinal Chemistry Letters 25(17) (2015) 3658–3660

M. Sander, J. Flesch and A. Ott

Using cell monolayer rheology to probe average single cell mechanical properties
Biorheology 52(4) (2015) 269-278

E. Wollrab, S. Scherer, F. Aubriet, V. Carré, T. Carlomagno, L. Codutti and A. Ott

Chemical Analysis of a "Miller-Type" Complex Prebiotic Broth
Part 1: Chemical Diversity, Oxygen and Nitrogen Based Polymers
Orig. Life Evol. Biosph. 46 (2-3) (2015) 149-169

A. Harrison, H. Binder, A. Buhot, C. J. Burden, E. Carlon, C. Gibas, L. J. Gamble, A. Halverin, J. Hooyberghs, D. P. Kreil, R. Levicky, P. A. Noble, A. Ott, B. M. Pettitt, D. Tautz and A. E. Pozhitkov

Physico-chemical foundations underpinning microarray and next-generation sequencing experiments
Nucleic Acids Research 41 (5) (2013) 2779-96

M. A. Zhukovsky, P.-H. Lee, A. Ott and V. Helms

Putative cholesterol-binding sites in human immunodeficiency virus (HIV) coreceptors CXCR4 and CCR5
Proteins (2012) 24211

A. Gamba, M. Nicodemi, J. Soriano and A. Ott 


Critical behavior and axis defining symmetry breaking in hydra embryonic development

Phys. Rev. Lett. 108 (2012) 158103

A. Ott

RNA in cycles

Physics 4 (2011) 52

C. Trapp, M. Schenkelberger and A. Ott 


Stability of double-stranded oligonucleotide DNA with a bulged loop: a microarray study
BMC Biophysics 4 (2011) 20

O. C. Aktas, M. Sander, M. M. Miró, J. Lee, C. K. Akkan, H. Smail, A. Ott and M. Veith


Enhanced fibroblast cell adhesion on Al/Al2O3 nanowires

Rev. of Applied Surface Science 257 (2011) 3489-3494
 

2005 - 2009

A. Melker and A. Ott (ed.)


Proceedings of the eleventh international workshop on nanodesign, technology and computer simulation

Rev. on Advanced Materials Science 20 (1) (2009)

T. Naiser, J. Kayser, T.Mai, W. Michel and A. Ott


DNA hybridization to surface bound probes: point defects in experiment and model

Phys. Rev. Lett. 102 (2009) 218301

J. Soriano, S. Rüdiger, P.A. Pullarkat and A. Ott


Mechano-genetic coupling of hydra symmetry breaking and driven turing instability model

Biophysical Journal 96(4) (2009) 1649-1660

T. Naiser, O. Ehler, J. Kayser, T. Mai, W. Michel and A. Ott


Impact of point-mutations on the hybridization affinity of surface-bound DNA/DNA and RNA/DNA oligonucleotide-duplexes: comparison of single base mismatch and base bulges

BMC Biotechnology 8 (2008) 48

T. Naiser, J. Kayser, T. Mai, W. Michel and A. Ott


Position dependent mismatch discrimination on DNA microarrays - experiments and model
BMC Bioinformatics 9 (2008) 509

P. Fernandez and A. Ott


Single cell mechanics: stress stiffening and kinematic hardening

Phys. Rev. Lett. 100 (2008) 238102

M. Kücken, J. Soriano, P. A. Pullarkat, A. Ott and E. M. Nicola


An osmoregulatory basis for shape oscillations in regenerating hydra

Biophysical Journal 95 (2008) 978-985

N. Aksel, P. Fernandez, L. Heyman, A. Ott and P. Pullarkat


Biological cell monolayer shearing apparatus for diagnostic purposes

Patent application EP 07 114 178.2 (filed 2008)

R. Bernal, P. Pullarkat and F. Melo


Mechanical properties of axons 

Phys. Rev. Lett 99 (2007) 018301

P. Fernandez, L. Heyman, A. Ott, N. Aksel and P. Pullarkat


Shear rheology of a cell monolayer
New Journal of Physics 9 (2007) 419

P. Pullarkat, P. Fernandez and A. Ott


Rheological properties of the eukaryotic cell cytoskeleton

Physics Reports 449 (2007) 29-53

W. Michel, T. Mai, T. Naiser and A. Ott


Optical study of DNA suface hybridization reveals DNA surface density as a key parameter for microarray hybridization kinetics

Biophysical Journal 92 (2007) 999-1004

G. Salbreux, J. F. Joanny, J. Prost and P. Pullarkat


Shape oscillations of non-adhering fibroblast cells

Phys. Biol. 4 (2007) 268-284

J. Soriano, C. Colombo and A. Ott


Hydra molecular network reaches critcality at the symmetry-breaking axis defining moment

Phys. Rev. Lett. 97 (2006) 258102

T. Naiser, T. Mai, W. Michel and A. Ott


Versatile maskless microscope projection photolithography system and its apllication in light-directed fabrication of DNA microarrays

Rev. Sci. Instrum. 77 (2006) 063711

P. Pullarkat, P. Dommersnes, P. Fernandez, J.-F. Joanny and A. Ott


Osmotically driven shape transformations in axons
Phys. Rev. Lett. 96 (2006) 048104

P. Fernandez, P. Pullarkat and A. Ott


A master realation defines the nonlinear viscoelasticity of single fibroplasts

Biophysical Journal 90 (2006) 3796-3805

S. Thakur, P. B. Sunil Kumar, N. V. Madhusudana and P. Pullarkat


Self propulsion of nematic drops: novel phase seperation dynamics in impurity doped nematogens

Phys. Rev. Let. 97 (2006) 115701

A. Micoulet, J. P. Spatz and A. Ott


Mechanical response analysis and power generation of a single-cell stretching
ChemPhysChem 6 (2005) 663-670
 

2000 - 2004

C. Fütterer, C. Colombo, F. Jülicher and A. Ott


Morphogenic oscillations during symmetry breaking of regenerating hydra vulgaris cells

Europhys. Lett 64 (2003) 137

L. Busoni, G. Cappello, M. Badoual, A. Ott and J. Prost


Kinesin motion in the absence of external forces characterized by interference total internal reflection microscopy
Phys. Rev. E 68 (2003) 021907

F. Gerbal, V. Laurent, A. Ott, M. F. Carlier, P. Chaikin, J. Prost


Measurements of the elasticity of the actin tail of „listeria“ monocytogenes

European Biophysics Journal 29/2 (2000) 134-140
 

1995 - 1999

A. Ott


The molecular motor actin-myosin on a substrat

Lecture notes in Physics, Springer Verlag (1999) BFb0104220

F. Gerbal, V. Noireaux, C. Sykles, F. Jülicher, P. Chaikin, A. Ott, J.Prost, R. Goldstein, E. Friedrich, D. Louvard, V. Laurant and M. F. Carlier


On the "listeria" propulsion mechanism

Pramana 53 1 (1999) 155-170

O. Thoumine and A. Ott


Biomechanical properties of fibroblast

Material Research Society Bulletin 24 (1999) 22-26

A. Ott


Derniers développements et applications de pinces optiques

J. Phys. IV France 9 (1999) 109-112

I. Gutsche Perelroizen, J. Lapault, A. Ott and M. F. Carlier


Filament assembly from profilin-actin
J. Bio. Chem. 274 (1999) 6234-6243

O. Thoumine, A. Ott, O. Cardoso and J. J. Meister


Microplates: a new tool for manipulation and mechanical perturbation of individual cells

J. Biochem. Biophys. Methods 39 (1999) 47-62

D. Riveline, A. Ott, F. Jülicher, O. Cardoso, S. Magnusdottir, J. L. Viovy and J. Prost


Acting on actin: the electric motility assay

Eur. Biophys. J. 27 (1998) 403-408

C. H. Wiggins, D. Riveline, A. Ott and R. E. Goldstein


Trapping and wiggling: elastohydrodynamics of driven microfilaments
Biophys. J. 74 (1998) 1043-1060

O. Thoumine and A. Ott


Comparison of the mechanical properties of normal and transformed fibroblasts

Biorheology 34 (1997) 309-326

D. Riveline, C. H. Wiggins, R. E. Goldstein and A. Ott


Elastohydrodynamic study of actin filaments using fluorescence microscopy
Phys. Rev. E 56 (1997) R1330-R1333

O. Thourmine and A. Ott


Time scale dependent viscoelastic and contractile regimes in fibroblasts probed by microplate manipulation

J. Cell Sci. 110 (1997) 2109-2116

A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach


Collective diffusion of "living polymers"
J. Phys. II (France) 7 (1997) 1099-1109

O. Thourmine and A.Ott


Influence of adhesion and cytoskeletal intergrity on fibroblast traction

Cell Mot. Cyt. 35 (1996) 269-280

A. Ott


Micromanipulation intracellulaire par princes optiques

Ann. Phys. Fr.  22 (1997) 181-182

O. Thourmine, A. Ott and D. Louvard


Critical centrifugal forces induce adhesion, rupture or structural reorganization in cultured cells

Cell Mot. Cyt. 33 (1996) 276-287

D. A. Winkelmann, L. Bourdieu, A. Ott, F. Kinose and A. Libchaber


Flexibility of myosin attachment to surface influences f-actin motion

Biophys. J. 68 (1995) 2444-2453
 

1990 - 1994

A. Ott, M. Magnasco, A. Simon and A. Libchaber


Measurement of the persistence length of filamentous actin using fluorescence microscopy
Phys. Rev. E 48 (1993) R1642

N. Morié, A. Ott, D. Langevin and W. Urbach


Comments on the selfdiffusion in L3 and other bicontinuous surfactant solutions

Langmuir 9 (2) (1993) pp 625-626

A. Khatory, F. Kern, F. Lequeux, J. Apel, G. Porte, N. Moire, A. Ott and W. Urbach


Entangeld versus multiconnected network of wormlike micelles

Langmuir 9 (1993) 933-939

A. Ott, W. Urbach, D. Langevin and H. Hoffmann


Surface self-diffusion in L3 phases

Langmuir 8 (2) (1992) 345

A. Ott, W. Urbach, L. T. Lee and D. Langevin


Thermal fluctuations of surfactant films in micellar and microemulsion systems

Langmuir 7 (1991) 1892-1894

A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach


Anomalous diffusion in elongated micelles and its Levy flight interpreation

J. Phys. II France 1 (1991) 1465-1482

A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach


Les vols de Levy ou la diffusion non brownienne

La Recherche 230 (1991) 378

A. Ott


Etudes des agrégats de molécules amphiphiles par des technique optiques. Cas des agrégats flexibles et rôle des fluctuations thermiques

Thèse Université de Paris VI (1990)

A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach


Anomalous diffusion in living polymers: a genuine Levy flight?

Phys. Rev. Lett. 65 (1990) 2201

A. Ott, W. Urbach, D. Langevin, P. Schurtenberger, R. Scartazzini and P. L. Luisi


A self-diffusion study of polymer-like micelles

J. Phys. Condens. Matter 2 (1990) 5907

A. Ott, W. Urbach, D. Langevin, R. Ober and M. Waks


Light Scattering study of surfactant multilayers elasticity. Role of incorporated proteins
Europhys. Lett. 12 (1990) 395
 

1985 - 1989

R. Messager, A. Ott, D. Chatenay and D. Langevin


Self diffusion in living polymers 

Polym. Prepr. (ACS Div. Pol. Chem.) 29 (1988) 393

R. Messager, A. Ott, D. Chatenay, W. Urbach and D. Langevin


Are giant micelles living polymers?

Phys. Rev. Lett. 60 (1988) 1410